Spatial estimates of Blue Shark, Salmon Shark, Pacific Sleeper Shark and Bluntnose Sixgill Shark presence in British Columbia

Spatial estimates of Blue Shark, Salmon Shark, Pacific Sleeper Shark and Bluntnose Sixgill Shark presence in British Columbia Description: Spatial information on ecologically important species is needed to support marine spatial planning initiatives in British Columbia’s (BC) marine environment. For data deficient taxa, such as shark species, species distribution models that integrate presence-absence data from different sources can be used to predict their coastwide distributions. Here we provide spatial estimates of the distribution of Blue Shark (Prionace glauca), Salmon Shark (Lamna ditropis), Pacific Sleeper Shark (Somniosus pacificus) and Bluntnose Sixgill Shark (Hexanchus griseus). These estimates were generated using spatial generalized linear mixed effects models and are based on data from two scientific surveys and the commercial hook and line, midwater trawl and bottom trawl fisheries. For each species, we provide predicted probability of occurrence and prediction uncertainty at a 3 km resolution for the British Columbia coast, and parameter estimates for model covariates (depth, slope, year, data source). Results show variable predicted distributions across species, with Blue Shark and Pacific Sleeper Shark showing higher probability of presence along the continental slope, while Salmon Shark show low probability of occurrence coastwide and Bluntnose Sixgill Shark show the highest probability of occurrence in the Strait of Georgia. The results from this study can support ongoing marine spatial planning initiatives in the BC and support the conservation and management of these important species. Methods: Data Sources The species distribution models (SDMs) are based on data from two fishery independent scientific surveys and from the commercial hook and line fishery, which are all conducted within Canadian Pacific waters. The scientific surveys include the Fisheries and Oceans Canada (DFO) hard bottom longline surveys and the International Pacific Halibut Commission (IPHC) fishery-independent setline survey. The study area is bound by the outer convex hull of these three data sources. Other DFO research surveys, such as the groundfish synoptic bottom trawl surveys, midwater trawl surveys and sablefish trap surveys were investigated as potential data sources, but were found to have insufficient presence observations for the species of interest to warrant their inclusion in the analysis. For more information on the details of the source data please refer to Proudfoot et al. 2024. Modelling Approach and Comparison For each species, we fit a suite of generalized linear mixed effects models (GLMMs) using the sdmTMB package (Anderson et al. 2022). For each species, we fit four models, each with a different set of fixed effects/environmental predictors. Additionally, we compared the predictive power of four models for each species, with each model having a different combination of environmental predictors (i.e., slope, depth, slope + depth, none). A summary of the candidate models is provided in Table 2 of Proudfoot et al. 2024. For each species, we selected the model with the highest predictive accuracy (assessed using the predicted log likelihood based on the cross-validation) as the best fit. Spatial Species Distribution Predictions We made predictions of species occurrence using the selected model and a 3 km resolution spatial prediction grid. Our predictions were made for the entire BC coast, and species distribution predictions were made using models fit to the full dataset, as opposed to models fit using cross-validation. We made predictions with year set to 2014 (the approximate midpoint of the dataset) and type set to IPHC (the dataset with the most even spatial distribution of data points). Uncertainties: Because limited survey and commercial catch data exists for deep areas off the continental shelf, predictions in these areas are likely more uncertain than predictions on the shelf. To illustrate this, uncertainty (standard deviation derived from the 500 simulated values from the joint precision matrix of selected models) was mapped across the full study area for each species. Additionally, because these models are based on data that likely do not span the full spatiotemporal extent of the species’ habitat (i.e., mid depths, surface waters, and data across all seasons may not be captured), these results illustrate a snapshot of occurrence but do not account for more complex migration and movement patterns undertaken by these species. 2025-01-27 Fisheries and Oceans Canada Beatrice.Proudfoot@dfo-mpo.gc.ca Nature and EnvironmentScience and TechnologyPacificBritish Columbiaspecies distribution modelsgeneralized linear mixed effects models (GLMMs)sdmtmbsharkDistributionFisheries Spatial Estimates of Shark Species Presence in British Columbia -- EnglishTIFF https://api-proxy.edh.azure.cloud.dfo-mpo.gc.ca/catalogue/records/cacbb231-bae8-42fc-a043-79d11494bd5a/attachments/shark_models_English.zip Spatial Estimates of Shark Species Presence in British Columbia -- FrenchTIFF https://api-proxy.edh.azure.cloud.dfo-mpo.gc.ca/catalogue/records/cacbb231-bae8-42fc-a043-79d11494bd5a/attachments/Shark_Models_French.zip ReferencesPDF https://api-proxy.edh.azure.cloud.dfo-mpo.gc.ca/catalogue/records/cacbb231-bae8-42fc-a043-79d11494bd5a/attachments/References_Shark_Model_EN_FR.pdf Data DictionaryPDF https://api-proxy.edh.azure.cloud.dfo-mpo.gc.ca/catalogue/records/cacbb231-bae8-42fc-a043-79d11494bd5a/attachments/Data_Dictionary_Shark_Model_EN_FR.pdf Data DictionaryCSV https://api-proxy.edh.azure.cloud.dfo-mpo.gc.ca/catalogue/records/cacbb231-bae8-42fc-a043-79d11494bd5a/attachments/Data_Dictionary_Shark_Model_EN_FR.csv Data SourcesPDF https://api-proxy.edh.azure.cloud.dfo-mpo.gc.ca/catalogue/records/cacbb231-bae8-42fc-a043-79d11494bd5a/attachments/Data_sources_Shark_Model_EN_FR.pdf Spatial Estimates of Shark Species Presence in British ColumbiaESRI REST https://egisp.dfo-mpo.gc.ca/arcgis/rest/services/open_data_donnees_ouvertes/spatial_estimates_blue_salmon_pacific_sleeper_bluntnose_sixgill_bc_en/MapServer Spatial Estimates of Shark Species Presence in British ColumbiaESRI REST https://egisp.dfo-mpo.gc.ca/arcgis/rest/services/open_data_donnees_ouvertes/spatial_estimates_blue_salmon_pacific_sleeper_bluntnose_sixgill_bc_fr/MapServer

Description:

Spatial information on ecologically important species is needed to support marine spatial planning initiatives in British Columbia’s (BC) marine environment. For data deficient taxa, such as shark species, species distribution models that integrate presence-absence data from different sources can be used to predict their coastwide distributions. Here we provide spatial estimates of the distribution of Blue Shark (Prionace glauca), Salmon Shark (Lamna ditropis), Pacific Sleeper Shark (Somniosus pacificus) and Bluntnose Sixgill Shark (Hexanchus griseus). These estimates were generated using spatial generalized linear mixed effects models and are based on data from two scientific surveys and the commercial hook and line, midwater trawl and bottom trawl fisheries. For each species, we provide predicted probability of occurrence and prediction uncertainty at a 3 km resolution for the British Columbia coast, and parameter estimates for model covariates (depth, slope, year, data source). Results show variable predicted distributions across species, with Blue Shark and Pacific Sleeper Shark showing higher probability of presence along the continental slope, while Salmon Shark show low probability of occurrence coastwide and Bluntnose Sixgill Shark show the highest probability of occurrence in the Strait of Georgia. The results from this study can support ongoing marine spatial planning initiatives in the BC and support the conservation and management of these important species.

Methods:

Data Sources

The species distribution models (SDMs) are based on data from two fishery independent scientific surveys and from the commercial hook and line fishery, which are all conducted within Canadian Pacific waters. The scientific surveys include the Fisheries and Oceans Canada (DFO) hard bottom longline surveys and the International Pacific Halibut Commission (IPHC) fishery-independent setline survey. The study area is bound by the outer convex hull of these three data sources. Other DFO research surveys, such as the groundfish synoptic bottom trawl surveys, midwater trawl surveys and sablefish trap surveys were investigated as potential data sources, but were found to have insufficient presence observations for the species of interest to warrant their inclusion in the analysis. For more information on the details of the source data please refer to Proudfoot et al. 2024.

Modelling Approach and Comparison

For each species, we fit a suite of generalized linear mixed effects models (GLMMs) using the sdmTMB package (Anderson et al. 2022). For each species, we fit four models, each with a different set of fixed effects/environmental predictors. Additionally, we compared the predictive power of four models for each species, with each model having a different combination of environmental predictors (i.e., slope, depth, slope + depth, none). A summary of the candidate models is provided in Table 2 of Proudfoot et al. 2024. For each species, we selected the model with the highest predictive accuracy (assessed using the predicted log likelihood based on the cross-validation) as the best fit.

Spatial Species Distribution Predictions

We made predictions of species occurrence using the selected model and a 3 km resolution spatial prediction grid. Our predictions were made for the entire BC coast, and species distribution predictions were made using models fit to the full dataset, as opposed to models fit using cross-validation. We made predictions with year set to 2014 (the approximate midpoint of the dataset) and type set to IPHC (the dataset with the most even spatial distribution of data points).

Uncertainties:

Because limited survey and commercial catch data exists for deep areas off the continental shelf, predictions in these areas are likely more uncertain than predictions on the shelf. To illustrate this, uncertainty (standard deviation derived from the 500 simulated values from the joint precision matrix of selected models) was mapped across the full study area for each species. Additionally, because these models are based on data that likely do not span the full spatiotemporal extent of the species’ habitat (i.e., mid depths, surface waters, and data across all seasons may not be captured), these results illustrate a snapshot of occurrence but do not account for more complex migration and movement patterns undertaken by these species.

Data and Resources
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Contact Information

Delivery Point: Pacific Biological Station, 3190 Hammond Bay Road

City: Nanaimo

Administrative Area: British Columbia

Postal Code: V9T 6N7

Country: Canada

Electronic Mail Address: Beatrice.Proudfoot@dfo-mpo.gc.ca

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